NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181431_1036722

Scaffold Ga0181431_1036722


Overview

Basic Information
Taxon OID3300017735 Open in IMG/M
Scaffold IDGa0181431_1036722 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 54 SPOT_SRF_2014-05-21
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1118
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010318Metagenome / Metatranscriptome305Y
F010532Metagenome302N
F031261Metagenome183Y

Sequences

Protein IDFamilyRBSSequence
Ga0181431_10367221F031261GGAGGMNRTRTYVMSVEKNSPEVLEQLNKLQEVRQGVRLLNRHSRRKHYVKCQGRWGRNNPDYNRRTIPFCPLDKAVKWDVYIYEK
Ga0181431_10367222F010318GAGMNVDSDKPKFIECIYEAPITFDLEELGIDWENVKDYYIKYGTLYVNFKDGSSEEHEGNQGETDWKWSAQENILTEDWTLVEGLNXXTEHYTKN
Ga0181431_10367223F010532GGAGGMNRTLYKKLEDICAREYILNKLSATKFRTFVDFLYDDIRTWDEPMNVSEVDIIHRIEEHMSYMVSSYLTKPYEGISMDEQALKQA

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