NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181431_1030092

Scaffold Ga0181431_1030092


Overview

Basic Information
Taxon OID3300017735 Open in IMG/M
Scaffold IDGa0181431_1030092 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 54 SPOT_SRF_2014-05-21
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1249
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036003Metagenome171N
F090997Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0181431_10300924F036003AGGAGMNTRMFNYKDKSVMFINCSLKHCYNTADYMIKRDKNNGYWKPRLYDDYDQDHPSVESIYDWIEIKDSVTDLPPVTADEIERAYNEIQ
Ga0181431_10300925F090997N/AVKAEETVYLEYFVEVPEEIVEQSKERLSKTYLKNAIHNWIDENQSEFNYQDYDSDRSWYDWEEVGEEWNNEH

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