Scaffold Ga0187222_1008556

Overview

Basic Information

• Taxon OID: 3300017734
• Scaffold ID: Ga0187222_1008556
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 4 SPOT_SRF_2009-09-24 (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2576
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033251	Metagenome	178	N
F067196	Metagenome	126	N
F069345	Metagenome / Metatranscriptome	124	N
F082525	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0187222_10085562	F067196	GAGG	MPKFNNIEEKQKFFRNAVKKLDTGLPKEASPDLIKFFVLHVITAYDHDDCWDDVKGFVDFALKEKSQFDSARQAVEDADNMLEAITNSKDK
Ga0187222_10085564	F033251	AGAAGG	MANKRKSSKDFPVDRTFSTWTAKEIDQLLEYKATGFKHNEIGEFMGRSTKSVNVKLSRIRNSVNEANNPVDNLTPFQKDLDETLFGRVSSDDKPKKARGPYKPRATKLSLTPQPKAADAFNVPKKPVYVAIVLVLVIVAWYLGSMS
Ga0187222_10085565	F069345	GAGG	MDLFAFGVCQMVIDCPECSHSDRKGEVEHEQFEMTSYGVYEPFGVWKICENCSGSGEIEA
Ga0187222_10085566	F082525	GAGG	MDYKINSGVPIPDVVLGRKRGKGKWQVLLSSMSNGDCVDIPNESYNSMYVAASRLGIDLLSRREADGLADGFVRIWRVSDGD