Scaffold Ga0181417

Basic Information
Taxon OID	3300017730 Open in IMG/M
Scaffold ID	Ga0181417_1000153 Open in IMG/M
Source Dataset Name	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 40 SPOT_SRF_2013-02-13
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 40 SPOT_SRF_2013-02-13

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	22031
Total Scaffold Genes	30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (30.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

22031

Total Scaffold Genes

30 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (30.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	33.55	Long. (^o)	-118.4	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

33.55

Long. (^o)

-118.4

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008497	Metagenome / Metatranscriptome	332	Y
F026402	Metagenome / Metatranscriptome	198	Y
F031873	Metagenome	181	N
F045103	Metagenome / Metatranscriptome	153	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181417_100015313	F008497	GAGG	MCLDNTTFNKLIPTELIATYGIPEYDEEGIQNGVIHPTFKELGEYNRRKFGANPMVKIGNAKFYIIELEASWLDGELSALLKLGKNKAYPKNCLMTRSEAAKFIRDNANDIDNI
Ga0181417_100015322	F026402	AGGA	MFQDIGKEIITKLNATSAFTTANGGSNRVFPVIIPQGVTYPSTTFEITNVSNFMSKGSSLNSCDVSIRIACFADVYLTTYSQAKAVVEALDLYEVDYTEDGVTYTAKFRFETLDDEYFKSPEKFYKNVIFNCLIIKN
Ga0181417_100015329	F045103	GGA	MTTRKFSLSKGEIITLHQGSVRAICSSVLANNKDYHLLDDLVQDINLILLSQMSETIESLHETNQIEYFVARVVVNQVLSTSSPFHTTYRLKQPKTPLKSDDYDSLPDRLWEEVFKLESQKAKDIMYLRFEYGLKIQEIAKIKGCSTRYIHKVLARSLKKIKNNSKN
Ga0181417_10001534	F031873	N/A	MTKKEYEVLDRWADRFDVTYTPTDSDTSFWDFTYKRNDKKYYCEMKQRNFTLDYAMEKYTEGLLLEAHKYERILRRTKNEKSAQGLYFNFFSDDKALVFNLNKIKIDKWIWRTMPETTDFTKRKFVYKYVTFLDYSKGKLFYI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181417_1000153

Overview

Ecosystem & Geography

Associated Families

Sequences