Scaffold Ga0181396_1010047

Overview

Basic Information

• Taxon OID: 3300017729
• Scaffold ID: Ga0181396_1010047
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 19 SPOT_SRF_2011-01-11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1896
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003677	Metagenome / Metatranscriptome	474	Y
F003834	Metagenome / Metatranscriptome	466	N
F014069	Metagenome / Metatranscriptome	266	N
F026154	Metagenome / Metatranscriptome	199	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181396_10100472	F026154	AGGAG	MNGIISVVRFVAYSVGGLAVRKAWNWLIEDVDPIPGSKEFDNEYYHTKSKYIRLTKLKEEHEAYRKSRRGNS
Ga0181396_10100474	F014069	AGGAGG	METVKAPINERVATKVMPLTKWFVEQYFQTFELMSSDPRFKALPPYNQTSCIATVIIATNNALDKSRDARKSAETLQDISKATEERKTVNE
Ga0181396_10100475	F003834	AGGA	MSSSKTPIRQDEKDYLDHFIETKYDDRKNVLKTEMQDTIDKEAEDNFEAFKDKLKITKMHDEVRTLYEDHKKFANEMDSILLEKKGKLDNAINVLEDKLDQWKKIRKWKNDIERSLIKEPDELDRLLKKLCHEETERDYYGGPRGKAIQMLDMSKEYCKNLLNAGQSLSTVWGVLDQEMGKEKINTNTIPKPEFLAITK
Ga0181396_10100476	F003677	AGG	MPNRKVIMVDQSLYYFEQDVGKKIYEMEYEVTYVTKWQVLAEDRDKATDIWIENSKMDLSTEDGKDCVCSYVKDYSQVGSTKVIAEIK