Scaffold Ga0181419_1057697

Overview

Basic Information

• Taxon OID: 3300017728
• Scaffold ID: Ga0181419_1057697
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 42 SPOT_SRF_2013-04-24
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1000
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002747	Metagenome / Metatranscriptome	533	Y
F006347	Metagenome / Metatranscriptome	375	Y
F026404	Metagenome	198	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181419_10576972	F026404	AGGA	MVIYGKTLEITDVTEGYTKEQVEQNIEKFTDERNDALYNLYNVKRATLAFNEGGNKYGYENLLDDTDFFTPEDFTDTYNVKGFTDEQVIEILGGFIQW
Ga0181419_10576973	F006347	AGGAGG	MVDRIEQLIDTLEQEINDGYNTLPDYETNNEGKTYVNSAQATLYELQKQITELKQGLEQGKNFSLLGDNV
Ga0181419_10576974	F002747	GGA	MAKDVRYFVDVCLEIYVPDQGCGDKAVTNESLDANLFANEICSQIPKAINKNFEYSERPYSVNDATFIK