Scaffold Ga0181419

Basic Information
Taxon OID	3300017728 Open in IMG/M
Scaffold ID	Ga0181419_1000209 Open in IMG/M
Source Dataset Name	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 42 SPOT_SRF_2013-04-24
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 42 SPOT_SRF_2013-04-24

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	20003
Total Scaffold Genes	28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (42.86%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

20003

Total Scaffold Genes

28 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (42.86%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	33.55	Long. (^o)	-118.4	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

33.55

Long. (^o)

-118.4

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003388	Metagenome	490	Y
F031297	Metagenome	183	Y
F052259	Metagenome	143	Y
F056155	Metagenome	138	Y
F060423	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181419_100020912	F003388	N/A	MAKDKFLLYMLAGIFTFQASVFGMGLYYCANNGGVDSCPKIGEIYEETFNVMIATVLALMTGSALSKKE
Ga0181419_100020915	F031297	GGAGG	MNKKEQNARMLDPMRFKIAKQNSVVPGGPQTNAPDPVVQSSGEPINGRSVYNDYAQNYQQMGSAILNPINVGPSGLQQNFPMGQRLNAQPFNMQKQPDTSGVSMAPDGMESGRLAGEAQKYGLNPGPMGMTGMPAQPAPGAFPGAFPGSSGPPMMQGMQSAEQAAGGMSPQNSMGPMTPGSTPTKIKKKGK
Ga0181419_100020916	F052259	N/A	MNPVAGGWTSHKMRSDDYEGKKRAAVAQSGQNSYIQGVQSVMDEGAGSAIANTRSTKYANANLMPNSVLQGEKSNFQQTDAPGNRPMADLPNQTGSVDTEVSSTNVPQQDPETMETDALERRLTMMAKGGQGFPGLNNRNREV
Ga0181419_100020927	F060423	N/A	MAINRTPYSVAQETLGMSSMQRGLGGMTSPVRPGPNAYDGVSNAAATNVQSYNNQRLAEQNTLQNIVSAAPQAATNAMGQVRSQTAAQSDQEAKAQLFAAERMSEALYANQSGTALMKMNAVMQSPEKAKFMNGIATGKAMSAGMSPDLGGEVATKNQYM
Ga0181419_10002094	F056155	AGG	MLVRMAGQALKPMVNTGEGCATKPETYPAKPKGGVSHGPPLLGQKYV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181419_1000209

Overview

Ecosystem & Geography

Associated Families

Sequences