NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181419_1000209

Scaffold Ga0181419_1000209


Overview

Basic Information
Taxon OID3300017728 Open in IMG/M
Scaffold IDGa0181419_1000209 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 42 SPOT_SRF_2013-04-24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20003
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (42.86%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003388Metagenome490Y
F031297Metagenome183Y
F052259Metagenome143Y
F056155Metagenome138Y
F060423Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0181419_100020912F003388N/AMAKDKFLLYMLAGIFTFQASVFGMGLYYCANNGGVDSCPKIGEIYEETFNVMIATVLALMTGSALSKKE
Ga0181419_100020915F031297GGAGGMNKKEQNARMLDPMRFKIAKQNSVVPGGPQTNAPDPVVQSSGEPINGRSVYNDYAQNYQQMGSAILNPINVGPSGLQQNFPMGQRLNAQPFNMQKQPDTSGVSMAPDGMESGRLAGEAQKYGLNPGPMGMTGMPAQPAPGAFPGAFPGSSGPPMMQGMQSAEQAAGGMSPQNSMGPMTPGSTPTKIKKKGK
Ga0181419_100020916F052259N/AMNPVAGGWTSHKMRSDDYEGKKRAAVAQSGQNSYIQGVQSVMDEGAGSAIANTRSTKYANANLMPNSVLQGEKSNFQQTDAPGNRPMADLPNQTGSVDTEVSSTNVPQQDPETMETDALERRLTMMAKGGQGFPGLNNRNREV
Ga0181419_100020927F060423N/AMAINRTPYSVAQETLGMSSMQRGLGGMTSPVRPGPNAYDGVSNAAATNVQSYNNQRLAEQNTLQNIVSAAPQAATNAMGQVRSQTAAQSDQEAKAQLFAAERMSEALYANQSGTALMKMNAVMQSPEKAKFMNGIATGKAMSAGMSPDLGGEVATKNQYM
Ga0181419_10002094F056155AGGMLVRMAGQALKPMVNTGEGCATKPETYPAKPKGGVSHGPPLLGQKYV

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