Basic Information | |
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Taxon OID | 3300017728 Open in IMG/M |
Scaffold ID | Ga0181419_1000209 Open in IMG/M |
Source Dataset Name | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 42 SPOT_SRF_2013-04-24 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 20003 |
Total Scaffold Genes | 28 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (42.86%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 33.55 | Long. (o) | -118.4 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F003388 | Metagenome | 490 | Y |
F031297 | Metagenome | 183 | Y |
F052259 | Metagenome | 143 | Y |
F056155 | Metagenome | 138 | Y |
F060423 | Metagenome | 133 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0181419_100020912 | F003388 | N/A | MAKDKFLLYMLAGIFTFQASVFGMGLYYCANNGGVDSCPKIGEIYEETFNVMIATVLALMTGSALSKKE |
Ga0181419_100020915 | F031297 | GGAGG | MNKKEQNARMLDPMRFKIAKQNSVVPGGPQTNAPDPVVQSSGEPINGRSVYNDYAQNYQQMGSAILNPINVGPSGLQQNFPMGQRLNAQPFNMQKQPDTSGVSMAPDGMESGRLAGEAQKYGLNPGPMGMTGMPAQPAPGAFPGAFPGSSGPPMMQGMQSAEQAAGGMSPQNSMGPMTPGSTPTKIKKKGK |
Ga0181419_100020916 | F052259 | N/A | MNPVAGGWTSHKMRSDDYEGKKRAAVAQSGQNSYIQGVQSVMDEGAGSAIANTRSTKYANANLMPNSVLQGEKSNFQQTDAPGNRPMADLPNQTGSVDTEVSSTNVPQQDPETMETDALERRLTMMAKGGQGFPGLNNRNREV |
Ga0181419_100020927 | F060423 | N/A | MAINRTPYSVAQETLGMSSMQRGLGGMTSPVRPGPNAYDGVSNAAATNVQSYNNQRLAEQNTLQNIVSAAPQAATNAMGQVRSQTAAQSDQEAKAQLFAAERMSEALYANQSGTALMKMNAVMQSPEKAKFMNGIATGKAMSAGMSPDLGGEVATKNQYM |
Ga0181419_10002094 | F056155 | AGG | MLVRMAGQALKPMVNTGEGCATKPETYPAKPKGGVSHGPPLLGQKYV |
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