Scaffold Ga0181388_1006927

Overview

Basic Information

• Taxon OID: 3300017724
• Scaffold ID: Ga0181388_1006927
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 11 SPOT_SRF_2010-05-17
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3014
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036783	Metagenome / Metatranscriptome	169	N
F065669	Metagenome / Metatranscriptome	127	Y
F086976	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181388_10069272	F065669	AGGAG	MSKVVSPRVFIDTCESFFEEFGGHQRVIASAFAQYIHTNWDEYTGSYSDACGVRDILNNCYDLSIPEINIGQWSLYVHYNSNACYASKLFDIKESNNGA
Ga0181388_10069276	F036783	AGGAG	MEIIRQSYASHIDTRVYMDLGYGEMEVDVEEIEMVDGVMSGRAYCDRREIEMHIDHKDCQRALDKYEAEISGLDDIHGEV
Ga0181388_10069279	F086976	AGGTGG	MSGDKIPPIDPVTGKFVTPLSGNKVYKTRKEVVDAHLSEEINNTRFLELIGVYMDAEEEAPEYGFVGVGCISFAESMLQYHQDGVERHIRIPTLYDEYSFKQESNDE