NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181373_1043659

Scaffold Ga0181373_1043659


Overview

Basic Information
Taxon OID3300017721 Open in IMG/M
Scaffold IDGa0181373_1043659 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - Lowphox_09 viral metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)820
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-20.1Long. (o)-70.419Alt. (m)Depth (m)15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002747Metagenome / Metatranscriptome533Y
F006347Metagenome / Metatranscriptome375Y
F076487Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0181373_10436592F002747GAGGMSKDANRFFVNVSLEIYVPDQGCGDRAVVNENQDAEWFANEICSQIPKAINKNFQHSERDYSVNWAHKGKVERG
Ga0181373_10436593F006347GGAGGMIDKITELLNELEQELNDGYNTLPDYQANDEGKTYVNGAQATLYELQKQITELKQGLEQGKNFSLLGEGPINV
Ga0181373_10436594F076487N/AVLYGETLEINENTENTNQAVYDLYEMKRETLAFNEGGCKQGYEDLLDDTDFFTPEDFTDTYNVKGFTDEQVIAMCENGGLL

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