Scaffold Ga0181373_1043659

Overview

Basic Information

• Taxon OID: 3300017721
• Scaffold ID: Ga0181373_1043659
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_09 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 820
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -20.1
  • Long. (^o): -70.419
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002747	Metagenome / Metatranscriptome	533	Y
F006347	Metagenome / Metatranscriptome	375	Y
F076487	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181373_10436592	F002747	GAGG	MSKDANRFFVNVSLEIYVPDQGCGDRAVVNENQDAEWFANEICSQIPKAINKNFQHSERDYSVNWAHKGKVERG
Ga0181373_10436593	F006347	GGAGG	MIDKITELLNELEQELNDGYNTLPDYQANDEGKTYVNGAQATLYELQKQITELKQGLEQGKNFSLLGEGPINV
Ga0181373_10436594	F076487	N/A	VLYGETLEINENTENTNQAVYDLYEMKRETLAFNEGGCKQGYEDLLDDTDFFTPEDFTDTYNVKGFTDEQVIAMCENGGLL