Scaffold Ga0181373_1014418

Overview

Basic Information

• Taxon OID: 3300017721
• Scaffold ID: Ga0181373_1014418
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_09 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1478
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → unclassified Phycisphaerales → Phycisphaerales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -20.1
  • Long. (^o): -70.419
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003330	Metagenome / Metatranscriptome	493	Y
F030754	Metagenome	184	Y
F066688	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181373_10144181	F003330	GGA	VGDVVRTRVIHQDNDPGTVVKILQVNANGAHVVAVQWFTWQTTDGQRTTEEYVSELELMS
Ga0181373_10144182	F030754	AGGAG	MARTPKGNNAFALAHGNRQAADLTHGVTCSFAGGCRVFDANISKKHEMHWLCEHHGGAKHSRANARDEEYANGIPGAERRMRFARVRAKQRKAAAFTGHIPSFLDKPEPKPKAKPTPKVQAKSQKQLRREAAMAELGLTEADLLTAFGA
Ga0181373_10144183	F066688	GGA	MAPVYTSNYANNVPNMSNSELVGMAKNRYTDSETMLAISKGYYRLAKEYLSENPNITPGAAQELWNHRGYVFKATLLSNGSIKLKKKEYAEVYRKYFKNNTRSQWRMMQAFLGGRYYWQPGKDNNNTPGELLEEIFDDLNEVEMDRTYTLRRFINHKNCPLNLALKIGTIKTPENARSYYSDDFDKLRNDAMLKVAEITKRESADSR