Scaffold Ga0181373_1002820

Overview

Basic Information

• Taxon OID: 3300017721
• Scaffold ID: Ga0181373_1002820
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_09 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3403
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae → Prasinovirus → unclassified Prasinovirus → Bathycoccus sp. RCC1105 virus BpV (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -20.1
  • Long. (^o): -70.419
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F098661	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181373_10028202	F098661	N/A	MNSLYKLRQEKLFNFIQSPSRTLFNIFKNNFFMIFNNDKKMIYNSKMSKKPAIIGLGIFVVLVIIALIIYLFTRPSKSTETGDVPTVKDAGIELVLNPADKSDKTEEYSIFTTEYALGEKSAKNIDVILTWTNGPTFATVGSLIFVHKVGDKKVRENVTTIDNLDSNASNQLVLKGSDITLTNDQDIVGTNTIDMYWNEVNNNNKLATIEFKIEQNHLDIPLNLTSVKNVTVPVQISSSSQAQAGVMATYTQYYILPYFYNVPIYIREANDNKGFHIIQTDGGQKQTIGGVDTFYIIQGLGKKFLSKDKDGNTLLRYDKTWKPQNEIFGSMNTVVKSAITVREAKPFKYEFIIKHLDYMATQTQHNLGAHISNVKLYDFDDTLIKTVTNDGIEFGKAPNHSGNSSEYIGAWKRTAYNVGDKLFTITSDKPVKKLTVEYGRPRYAPGWTIKENGKVRYEDVRNHDSQENPSPVTYTYTLSRFDDGIGHLWYSGYYDISEMEDIGMEYGLINPNSTHDWQYDINTYEGCRLRAIEKGYNAFGFQSIYKSDGTTGEQGTCWLRQVPNTGSHAFKSLDPTGKGGKKDKHVTGCTVKGKKVSNKC