Scaffold Ga0181390_1012289

Overview

Basic Information

• Taxon OID: 3300017719
• Scaffold ID: Ga0181390_1012289
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2965
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002858	Metagenome / Metatranscriptome	525	Y
F008883	Metagenome / Metatranscriptome	326	Y
F023754	Metagenome / Metatranscriptome	209	Y
F038216	Metagenome / Metatranscriptome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181390_101228911	F002858	AGGAG	MFIDEKSIYVVDGGDYSVYCLGYTQARAVTNDIMKADPWGGIPFVLRKDLELSFDDRGNAVMTKSTLDKILELASDELPEGEQ
Ga0181390_101228912	F023754	GGAGG	MKQPENDHVKHFGNDGPIGNDAEIIVYYEERGPAEPVLRIPFWYCKDELGMHEHFEESVRRTAK
Ga0181390_10122892	F038216	GAG	MTKQINYGMHEQLENSHRTLSDAVTMYAIYYSDWTETLNELSEYYASDEWKDSFDQRSEKHLELVRRRNHTIREIQEIGAQLRSVGLDVDLCEWATVDDYYIDDAA
Ga0181390_10122895	F008883	GGAG	MIFGRYTIWYNHEDHVWDIYDSRKGFVYPEYTINNYSRLLCGLRDKLGFLDTDKNHQRFWSVMRFMRRLRR