Scaffold Ga0181375_1019861

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0181375_1019861

Scaffold Ga0181375_1019861

Overview

Basic Information
Taxon OID	3300017718 Open in IMG/M
Scaffold ID	Ga0181375_1019861 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - Lowphox_11 viral metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1154
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Subarctic Pacific Ocean
Coordinates	Lat. (^o)	-29.499	Long. (^o)	-71.609	Alt. (m)		Depth (m)	160
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012033	Metagenome	284	Y
F015480	Metagenome	254	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181375_10198612	F015480	AGGAG	MDLPTLEDMHISEHAENVYAQIIAEEDIGEDYGKKAIIQERIHTPRQHIF
Ga0181375_10198613	F012033	AGGAG	MERKLSYKKEYTHPGNIYFKYVGNMTEDGAMKLQERAGYHPAGYGFGNFACINNVARWNCSNCCD

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