NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0181350_1067081

Scaffold Ga0181350_1067081


Overview

Basic Information
Taxon OID3300017716 Open in IMG/M
Scaffold IDGa0181350_1067081 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.DCM.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)926
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)36
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003803Metagenome467Y
F007570Metagenome348Y
F073084Metagenome120N

Sequences

Protein IDFamilyRBSSequence
Ga0181350_10670811F007570N/AMNEDITYIKKYIKTFNDRRLREEYNLYVLLEKPTILENYFKDFIKQEIGTRGIGV
Ga0181350_10670812F003803AGGGGGMKKDKTLLRFRIYDGDREYTDYAIINKKQRIAFDDKEIISKFFYDNDVSKEQFLSDGRAVRIESEIPITNLDVKNLENLSMAFLHDFKLEGAI
Ga0181350_10670814F073084AGGMTKQDKIIDWICNNYITNIKEKKWPNDSWHYVIAKAFDLHNMTLPELKEFKIELTKED

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.