Scaffold Ga0181350_1032100

Overview

Basic Information

• Taxon OID: 3300017716
• Scaffold ID: Ga0181350_1032100
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.DCM.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1444
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 36

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016125	Metagenome	249	N
F023831	Metagenome / Metatranscriptome	208	N
F100667	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181350_10321001	F023831	N/A	MSIRTNIRNATATALTGALVVPTANILRGRNNTIASVSFPAAAVYAISEQIEVRTLGPSNRTQYRQLQLVVDYFIAESGTYLIDDLFDTGSAAV
Ga0181350_10321002	F100667	AGG	MISIFSDTKKLEYALARLADAAKVDLGLVIKQEGAYVARTIMQITPPTGDKLPKGSQTQIPLVTGGTITKTKAGGLSTNAKEQGENAILGDLFGGRQLAKEKSIGIFQNIKNSTEVPPRYGKNETMGVNLGWEGSKKIRIYRKFWQPGASIEQMRAFHYANRNERGRPKQVTRSAIGRWQVQDQMWISNEAADAYLKYTQKKVGLAKAGFAAAAMACGVRVPRWIKRHMAKAGTAQVQFGQNPFVSGRTTGNKIPDLQRVVDSALKIRYKVTLSKFRAVMANRAVNLGFTKVGGAMPLPKEA
Ga0181350_10321003	F016125	N/A	AQAGVSFTYQSVAVTGIWSAASNAFADFEDQRRDDSKFTIFLLTSSVSAAPQVTQTLSRAGVTYFVERVTLDAEGAGCELGVAKVI