Scaffold Ga0181350_1004061

Overview

Basic Information

• Taxon OID: 3300017716
• Scaffold ID: Ga0181350_1004061
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.DCM.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4257
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (94.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 36

Associated Families

Family	Category	Number of Sequences	3D Structure?
F058795	Metagenome	134	Y
F064498	Metagenome	128	Y
F074585	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181350_100406115	F064498	GGAG	MRKRWLYKVYLAGRFVRAFTSRAAARHFMEDMTDLDLPFLILPHEDGQIPYMIGELK
Ga0181350_10040612	F074585	GGAG	MTTQKQIRAAFWSAHPTLTRRRHRYGWSASDKTAELVHHVDARSAFVDYVDQLAREGIISNDLAQRVTL
Ga0181350_10040613	F058795	AGG	MNELHPLFQAILRLYAPPAPNPTPETIDAAMLADKLADGYNQRNIERAIKLEQQNPKD