Scaffold Ga0181370_1003826

Overview

Basic Information

• Taxon OID: 3300017715
• Scaffold ID: Ga0181370_1003826
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_06 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1954
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -20.1
  • Long. (^o): -70.419
  • Depth (m): 310

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012401	Metagenome / Metatranscriptome	281	Y
F014127	Metagenome	265	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181370_10038264	F012401	GGAGG	MIDGILSLEKAALEKLTEDRIASGSLGEEVEEVLTAAGIYWDTLNKEYFNIDVFQAETFERLAAEYASQDYA
Ga0181370_10038266	F014127	GGAGG	MLERINNVKGRILIAGDESSWDFGFMESLEEQMTKRGSLSPRQEEVLQQVEGRWSDEALKHRASWVDDWDKDKEAKFWIALQYYHKTGYYGNIVYKYLTTAGCRCAGAPSEKEYNKLVLNKYAAGVIRNVQGESKFPVGGTAVFRTGARTNKNKPCVILKHGSAEHVNSHAKGAKPIQVLPIG