Scaffold Ga0181412_1024704

Overview

Basic Information

• Taxon OID: 3300017714
• Scaffold ID: Ga0181412_1024704
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 35 SPOT_SRF_2012-08-15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1652
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000499	Metagenome / Metatranscriptome	1074	Y
F003326	Metagenome / Metatranscriptome	494	Y
F015398	Metagenome / Metatranscriptome	255	Y
F088823	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181412_10247041	F088823	N/A	GTDGVYLAMNFDKKFNGACGFIIRKNPKCYNADGSKKDIKAMYANQGKEVDNATKHGLVYDLETDMFVPIKK
Ga0181412_10247042	F000499	N/A	MQKEIHKEDYFGTLMCILVDESRRIMSTFNPTKQLHKIQNDMCKAGSWIDSMPIGTIVETVPQESIQKLQANVLPEYRRLAANLIDRFISEFEAQGGRRAEITEKFESMYKWRQ
Ga0181412_10247043	F003326	N/A	MATIKEKKKLIRTIKNPNRFFRLNFSRYGGEVAMGTITKDQYEYWSDNDGFEEYMVAVDYDPADANKEIPKRAQFDQPFYEYGNICHMSGPEWDDSQTMYIEEIDKNGKPMEDEDGNFVQDIQHDFGDLESLGAEIICSEEHHAGTKSCENEYYVFGQYFNKGGWHTPDIIKTGPDGIEIDKLKIRYVNADGFKVFNDIEYDGEEYYLEEDSTGKSSSFYVSCGDKI
Ga0181412_10247045	F015398	AGCAGG	MATEKLKFKLELYATMWDKPPHAEITVGGKTYFDDDISSTEDNPTLIEFEAEFNEDTKADLIINRSGKGANQTVVNE