Scaffold Ga0181391_1006278

Overview

Basic Information

• Taxon OID: 3300017713
• Scaffold ID: Ga0181391_1006278
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3154
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017045	Metagenome / Metatranscriptome	243	Y
F072753	Metagenome	121	N
F092717	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181391_10062783	F092717	N/A	MADFDNTISLWKRKPKESDVAGKAYPHYTGKLNVDGKVKDLSVWIQTDPERKKKNPNIPDMSGKVQEVYKKPENNNEEIPY
Ga0181391_10062785	F072753	AGGA	MNNNGHIYLSKIKYDCLSFISNFIKQNKFSPTYKEIGEHFQFSRARAGAICAELFKLGLISKGKAAHRKIRMTDKQSTQIPTLNFNKEYSTMDLRR
Ga0181391_10062787	F017045	AGGA	MAKSNSLLRRYAKLNKLHGEIMQKPKNNVGQCVHSLQAFKKYVKTFRQIVLVENGDAIFKHTQL