NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181391_1004910

Scaffold Ga0181391_1004910


Overview

Basic Information
Taxon OID3300017713 Open in IMG/M
Scaffold IDGa0181391_1004910 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3601
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046648Metagenome / Metatranscriptome151Y
F059991Metagenome / Metatranscriptome133N
F074141Metagenome120N

Sequences

Protein IDFamilyRBSSequence
Ga0181391_10049101F059991N/ALLEDMYLQTEFAQGDTNADTGAKDSFLVDMAGAFTFSKIRIVYNGNTVFETTPEHLVVSLYAKASREESLVLDAMLGSAIVGAASDTHTALEGRMQMSSAFGGQKLSCPLKCWFSESLGRNFDLYSLSSKCFLEVDYRPILDVHGKAETVGDRITYAGSNLLCFLNELSPQELSAYQSRNYAPGTVSSQLAYTTTSLQESIATPVVATATTNGNKIKINSISGLVRRVYIFATLDSDRASTTAKAYVNLVDISSYKLSANNQTIYEVQDCGVGVDNLNRSSGNGYQTDQFVEMFHNKMIGPCNSTVASDTFKLMDIGVDKSLGKTTGDEFDFGRVKVINFGKNPNDYSSADGSLALSQINVPELEVKFPTGTSGAHTVHVIAEVLTLNTYNTSSTGQINFKSISE
Ga0181391_10049104F074141N/AMSDDLIDFKDPHYAKKNKKLCIYCSYKGAVPSKNNQFCSEICRLLHLSVSKELNLEDIGKLIKLSKIDLIHIILNLKQQKISIQSLHDILNKPFEYKQKMLEKTEGTFKLDFS
Ga0181391_10049105F046648N/AMVLLTFSFTGENNTGSATFTITQEYKFKNLYLKDIKYNIVNEKLEEIIGKATTNAGLGSIDTTITSPLALQMDFLDKRDCVTYSLDDGEYGGGSLNTAIQTTGLIPFGYAGKTLTNISDTSTVSHSYPYHLIINRPQTWAVGKVLVFNLYYRDVQTDGLIKDWALMSGTTDAFSDICSIDITLQLE
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