Scaffold Ga0181391_1002193

Overview

Basic Information

• Taxon OID: 3300017713
• Scaffold ID: Ga0181391_1002193
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5561
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003807	Metagenome	467	Y
F022658	Metagenome / Metatranscriptome	213	Y
F051963	Metagenome / Metatranscriptome	143	N
F078735	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181391_10021934	F078735	N/A	MTSIMQIDTIGKRYGLLPSEVIVRADSFDLFIMDAALSFEQYHNQRSETGKAPVPDFSEDELLEIFNKDK
Ga0181391_10021936	F003807	AGGGGG	MSPRHLLINYLEKQMTEQNAVWLKSDDEKLRSLISDEAKMMPMLDNMQATIRQLKSKQQFRLALLNQLLESLDGNTK
Ga0181391_10021938	F051963	AGGAG	VALSNLPLVNKAQVVTYLKEVAKVQTPIIEVSSTFPSEDDNIAYGLYVDDVTDNGRSVNQLGIQNCASMYNAEDQFNILYISFQNDPQAPVILNSINNLAANVNFFDGYTSVEFDRDVTIGQRSEIHNYTFTLTRLEFNNAYQS
Ga0181391_10021939	F022658	N/A	TFMATKIFYESIVSDTSNVNSVDAANYGHALERYEKEWEKALQLMNFYDLNQDAPDGPTTKLEENWTADPDYFNNNRRWF