Scaffold Ga0181403_1018191

Overview

Basic Information

• Taxon OID: 3300017710
• Scaffold ID: Ga0181403_1018191
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 26 SPOT_SRF_2011-09-28
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1497
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → environmental samples → uncultured delta proteobacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021539	Metagenome / Metatranscriptome	218	Y
F021862	Metagenome	217	Y
F028002	Metagenome / Metatranscriptome	193	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181403_10181912	F021539	N/A	MNKKTEWCIIIFLTVILIGLSACGPNPHVDKQSPHETEEEMNQQITKDLDAMDKEAELERTPGPTNFESIADALGCMFAPDDCPLKKRTEEQKMDR
Ga0181403_10181913	F028002	AGGAGG	MKKVIDEIKKNKKAMIGVAVIVLVFAWVLITNEPAPVEAQ
Ga0181403_10181915	F021862	GGAGG	MFTRLRGWFDTWKQNLFDAYDPPKPTVYKLGNKRYIKKKILNRPKGQKGPYIK