Scaffold Ga0181403_1008732

Overview

Basic Information

• Taxon OID: 3300017710
• Scaffold ID: Ga0181403_1008732
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 26 SPOT_SRF_2011-09-28
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2192
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004376	Metagenome / Metatranscriptome	441	Y
F029563	Metagenome / Metatranscriptome	188	Y
F041716	Metagenome	159	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181403_10087323	F041716	AGG	MKKIKQSRVLEIGNIFQRFMDKHKNLECVGSGFLINSTNEFERDLEINYKGKEYIITIAEVERTL
Ga0181403_10087325	F029563	GAGG	MKVYNITFVEECTSQVKIKAETLEKAKEIVNSGDFSGDEIIERDHFQITKSYEESEEINDTI
Ga0181403_10087326	F004376	GGGGG	MRCLDCGCNDGTLLKEFDNEKSYSWYELSQMTEVCASCESENIKTESEEINESI