Scaffold Ga0181403_1008574

Overview

Basic Information

• Taxon OID: 3300017710
• Scaffold ID: Ga0181403_1008574
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 26 SPOT_SRF_2011-09-28
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2212
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage MEDS1 group (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019153	Metagenome	231	Y
F036706	Metagenome	169	Y
F099140	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181403_10085741	F099140	N/A	LRKFKFIMTTKKLYKVKTQSNLYEVFEVEAESYDKALDIIMPTIYDGTDDYPIEAERVGWWFDGYGKSVLDEDDEHKGLFGISITEEEADKTPYYEIVHPKGCFTGDWREPTEEEWRADQKQAVADGRLSV
Ga0181403_10085742	F036706	GGA	MPYFRSSLGIDFPKAPYIGQVHYDFDLKRTFRYQEKDFGDCILKSTIDWFHWVDITDKKL
Ga0181403_10085745	F019153	N/A	MKDDGFMKMIHKKLSPETELAVEMRCREVWACEDIEQIKAFCIDLMKNHARAEAVLSTAMMRVIELESRLSAIKTPTRKHTGIHRVIWWIEQLQMHWTYRKVTKKYPK