Scaffold Ga0181403_1003950

Overview

Basic Information

• Taxon OID: 3300017710
• Scaffold ID: Ga0181403_1003950
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 26 SPOT_SRF_2011-09-28
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3282
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009045	Metagenome / Metatranscriptome	324	N
F030153	Metagenome / Metatranscriptome	186	Y
F072288	Metagenome / Metatranscriptome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181403_10039503	F009045	GGAG	MNKLSENFTPSRISRGNRHIVKGQIIQGDEYEVDGIRRAFWSNPDGSHSCHLFRLVKGEVIDRVTVDSWKGEDLNQFALRTESIILGGAK
Ga0181403_10039504	F072288	AGGAGG	MKKEDNPFLNGLIAVDPYPKTERLNTLEDLRDEICEVLAERMRDTAYSEPSTGETHLYNYMVQSLVDRGLADSRAVKIVRALETNNMSALAFSVCACDEWNFPHLLKIEPRIFHMLLQNETDPVLIQRLEEVMR
Ga0181403_10039505	F030153	AGGAGG	MSLIVDFTKIDEVAKDELWQYQEMIGYYMMAIGMGEITEKNHLEVYARLVLLQASTLDGSKPWITLRMVKGLINARFNIAFESKAKFSTRMMKATLREVERQEAKEVQDVA