Scaffold Ga0181403_1000161

Overview

Basic Information

• Taxon OID: 3300017710
• Scaffold ID: Ga0181403_1000161
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 26 SPOT_SRF_2011-09-28
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15962
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041865	Metagenome	159	N
F045138	Metagenome	153	N
F091008	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181403_100016117	F041865	AGGAG	MKRNENSYAKVKNNEMLNYRNQLGISQVNMAKKLGLSHRMWNHYEHGTKPVPISVVLSAKYLCKNMDKMDKLHDDIKKHEEPLTKWDVDRIEALMRKMKDDIYENSDIVSKILSQSHKEMGFLLSKIN
Ga0181403_100016119	F045138	N/A	MFDTINTNKNIFDNQNFVFGVEPEFNSRSYTEMNRYNNSLGSNKIKGLEYVYDGSRVDGEARLPILSNSQKSYNYLKSVLEQLNDYGATVNWTTSIHVHLSRRPITIDPNDFHDKSIEYTSLHGRALPSRNGTDYFGDAIPLEIVKDLGYRVSKNIIQFNSFLAPSRIDDGGYAVDAMRRAGQKNGYFCKKPLAPNVIKNTESTWNKLKRVISVGGKFSAINLNHWDDYETVEFRSHGGTLEIDKIWSWMIFLSNMQKHSIINRHSQVQALQDTPSYIGRSSRTRQSIAYSLMRRVGGATTQEIMDASGIQTAQRVRSMISEQIRPTLINQFGRDILITHNQQHYNHSYSSSQGRYDLNGYEIPLQVNNGSGGAVFASNGGTNLLLGLSNQYKSNLKPFRN
Ga0181403_10001614	F091008	GAGG	VDGIKLAEYLYKNIRQRKEELSQSLADGSIDSMEDYRFITGQIRGMTWVEEELKSSMKGTDLDD