NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181403_1000121

Scaffold Ga0181403_1000121


Overview

Basic Information
Taxon OID3300017710 Open in IMG/M
Scaffold IDGa0181403_1000121 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 26 SPOT_SRF_2011-09-28
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18743
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (75.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034554Metagenome / Metatranscriptome174Y
F047367Metagenome150N
F047687Metagenome / Metatranscriptome149N

Sequences

Protein IDFamilyRBSSequence
Ga0181403_10001211F034554N/AHRQLLHSILNVADSDSDAKIENSGYKAVAELRDSTLTSPTSTHWKTRLALDEPEALEGIMNKLQYEGCFFFEFSPQAGQTAISGVSPLRYFTIADSVTAAADLSQIDISDYELGITPVSDLETNIVVNYKKHPADNQYLKQDTYTSAVSGSVHGTIFDNASHQKQEMNLDFLFDAVDDVSGSRNSSWINFRKSLFGEYKTTVNATLVNPEKYAMLQVGDAIDFGEETFGEIGSPFDEISDTFDSFIAMPTRLFKDAWSGKKFIITNLKRTLGKVTIQTREV
Ga0181403_100012123F047687GGAMKAKDIANFTKTNYGQLASHARGLIVKDMNKGVMQNGIKKYDRNKASEEYAKKKATGALGKFRKSDRVTMLLSGETARRIRPEGKRDRATLVFENGTIVQANEDKGYVIADLSGKNRDSSALFLQKIVDRNVKKYESKPITIKIGK
Ga0181403_10001217F047367AGGAGMFINLKDLKANIGSPIKLTLNSEPVFVEKEWQGRTFNVFNYRVLFNGVENELSATDSLKRKIDSELKVGDDFLLSWEEFTKDGRLMNYWKVVKEDNSGYQNLKQPVSNGVANGVNEFDQKLQESKAEQAVVKTNKEYVSPARNGMIFNNTIKLYIANDMAWTQDEFVSNYKRVESFLDSCENAQETKPFELPVEKPVQQKVALSQTYSQDDLPF
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