Scaffold Ga0181403

Basic Information
Taxon OID	3300017710 Open in IMG/M
Scaffold ID	Ga0181403_1000116 Open in IMG/M
Source Dataset Name	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 26 SPOT_SRF_2011-09-28
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 26 SPOT_SRF_2011-09-28

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	19314
Total Scaffold Genes	45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (22.22%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (14.29%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

19314

Total Scaffold Genes

45 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (22.22%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (14.29%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	33.55	Long. (^o)	-118.4	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

33.55

Long. (^o)

-118.4

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004523	Metagenome	434	Y
F005491	Metagenome / Metatranscriptome	399	Y
F008022	Metagenome	340	Y
F009491	Metagenome / Metatranscriptome	317	Y
F030052	Metagenome	186	Y
F058131	Metagenome	135	N
F071125	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181403_100011612	F004523	GGA	MSTEIRSAREAMTIFKILGIKDVTTDRQRKNGTTVYELPISQVWQTLNPKPLRFATYKAGYVRNVTEGLASPYQINKTKKVSTRTSGYAYDTIERILIHDWEERIIYLAKFIIKNYYKKTTYIMSDYVMDCLREAYVRDYNNQPSNRLPFGDEVQVIVNGHRYNLS
Ga0181403_100011613	F005491	N/A	MSAFYKDTRFNGKLVRLEDVIDETYNRALKTIDDSLYELLNDKDDDEFYMDYKEAFGHIVEELQKFHNNDE
Ga0181403_100011614	F008022	N/A	MTKTELVAKIEALQAALDTKTQEQNAYRGQIDTLKKQLEDLNKPKLTPLQFDAIREAIEEGVGQFDFDDTDNYSYDFHIDYDNRIAIESFSFDNAYDLGQEIYNVIEELFAEDDAPEDDNQLNQD
Ga0181403_10001163	F009491	N/A	MSNTIKSNQIQIIKINNNTYLPYQLHQLPKFFDKYTTDHFNLKGYCYISINDHSDSFNLKNFKDRLTFNKDIHYSLKR
Ga0181403_100011640	F071125	N/A	MKYLLAITLSLLIVQTPVFKKDYAMHFAAGYITAHATKSIIIEHTDNKKLIKFGPLVAAITIGVTKELVDKYDSNPKSTFEWQDMLYTAGGGVTLISFTINKR
Ga0181403_10001167	F030052	N/A	MDNITDMNNKLQQLETLLQVHDWYYAMSDDNYYYKLGRKQYEQIWKLMDELKDSGYFTESENLYDKYSK
Ga0181403_10001168	F058131	N/A	MTITFNNIGKTYKVSSDNTVKVIHHHDSIVSVCGEYFKNKYTNEWLSELEVQDYYDSYKLEDEYENKYY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181403_1000116

Overview

Ecosystem & Geography

Associated Families

Sequences