Scaffold Ga0181403_1000047

Overview

Basic Information

• Taxon OID: 3300017710
• Scaffold ID: Ga0181403_1000047
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 26 SPOT_SRF_2011-09-28
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28336
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (18.60%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010243	Metagenome / Metatranscriptome	306	Y
F072833	Metagenome	121	Y
F078930	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181403_100004734	F010243	N/A	MNKSLTYILETKTTQSGVRGERIHKVVAESLTDAITKFSVIKQLRPDQLIKLFSVYEQPSDGR
Ga0181403_100004735	F078930	N/A	MNNQVMADNQLKKDLKDILKIKGAITKQRPVKGLIKKEAFIRFIDNYKFANDRALMLKMEHAIDFVNFEEPFVQSIEALLEINFNKNQLQIIHWWLYEKWNTGDESVLQLNNAETGEELPSDTPEELWDLIQSLK
Ga0181403_100004741	F072833	N/A	MKVGDTINFLCFGIPTTGEIYEVDKINKTVSVLARDGYKYPNIQTFKTLPKKKKDIPPWYILKK