Scaffold Ga0181387_1005573

Overview

Basic Information

• Taxon OID: 3300017709
• Scaffold ID: Ga0181387_1005573
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 10 SPOT_SRF_2010-04-27
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2476
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028038	Metagenome / Metatranscriptome	193	Y
F029926	Metagenome / Metatranscriptome	187	Y
F074171	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181387_10055733	F029926	N/A	MRLDQVVKPNSKVMTKLAQDAIDKIILDASEGKFQNGKSGYSYKNDTYKKYKANSMQGKNGKLKAFRSQSTDTQTAFVNMKLTGRTLRSMKGSGKTDTAIIAYDRGEIVLGNQKRGYDIYDLSNKNKEFIAERFSKELLDRNIKKYVSKTTIIK
Ga0181387_10055734	F028038	N/A	VSKLANLDFYSKEIENIQQQLIDKLDNLVVGLGKVSDTELMQIAKQIDFFAEMETLGFTKLMNRVGKTFDDEIARVFAELSKRELGKVSAASIDALRELKNFEMTYLTNGVRQYSDQLKTAMLRGIITGENNIQIMNNINSTFGVGTYISSSETSFLINDAFSRFSNTTRAKAFEEFPEIKFQYIGTSDNKTREVCQRALQEPPLTREEIDALGYVDFANRGGYNCRHDWVRV
Ga0181387_10055735	F074171	N/A	KYMVDSIAQSNNVRINWTDKSSESGLSKKMGQIDLMDALRSDVEQIYRPFEKEQFRIAQRICEVSGGINLGDQFSIDFAEREVPMSTDEEIKYYSWAFQNDLETRQSYLRKKNPDFREEEIQSIVEQIDAEQPQAQDETQSIIDRIGEQVG