Scaffold Ga0181387_1004350

Overview

Basic Information

• Taxon OID: 3300017709
• Scaffold ID: Ga0181387_1004350
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 10 SPOT_SRF_2010-04-27
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2802
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: unclassified Hyphomonas → Hyphomonas sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004629	Metagenome	430	Y
F005038	Metagenome / Metatranscriptome	414	Y
F053631	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181387_100435010	F053631	GGAGG	MIRAIYFALCFGLALFGLFVITHINLTLGLSMFALFIVKFFLMLPQYKEE
Ga0181387_10043502	F004629	AGGA	MIPTKLTVDQLDNYFQTATYVERYMPSPLNIKNKRTEMFYIIEKLYGIGKDKDSYKNEEKPKMKIRLNGEQIQIYEFCILLLVKANEKDRDIISLRNFPYKRSFRQLKRFFLPISHEQCRIKYYNALYELLKLYHSKGRAYFLK
Ga0181387_10043509	F005038	AGGAGG	MKAKDLNIYNLFSATYKKRKMFSFIGFSELSLMPKIDKPIRQISNVYQFPIKQYYNQKRRVK