Scaffold Ga0181369_1005847

Overview

Basic Information

• Taxon OID: 3300017708
• Scaffold ID: Ga0181369_1005847
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3252
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (7.69%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -20.099
  • Long. (^o): -70.892
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005351	Metagenome / Metatranscriptome	403	Y
F009959	Metagenome / Metatranscriptome	310	Y
F050305	Metagenome	145	Y
F086293	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181369_10058473	F005351	N/A	MYNVNNPSNWSWSKAFAEMDKTVHQAEMTQQIINHLHNYDGGEKVFKQLDKENQEEMYNILTQIL
Ga0181369_10058474	F050305	N/A	MNNLNTTVDKVAMSEFDMHYYQLGDNEKQWCHDEMVNNPKWLKKDWEDPLWSVADKWKAGLPIYKTYINE
Ga0181369_10058475	F086293	N/A	MNKIIIITSVITSGLLGYNAKKDGTRVEYALDNVQYIKSWVQEDVNNGVMDSAYAEYYLNSLNQTEDLLIEELTN
Ga0181369_10058478	F009959	N/A	MTEDEVIDKVCDRVVNTIYNELDYYMFEFLGYTETNEQYVKDAELLINKIINNLTK