Scaffold Ga0181369_1002382

Overview

Basic Information

• Taxon OID: 3300017708
• Scaffold ID: Ga0181369_1002382
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5239
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -20.099
  • Long. (^o): -70.892
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010243	Metagenome / Metatranscriptome	306	Y
F048242	Metagenome	148	Y
F072833	Metagenome	121	Y
F092854	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181369_100238213	F010243	N/A	MNKLTFVLETKTRKGVRGERIHKVVAYSLTEAITMFADIKQIRPDQLIELFSVYEQPNDG
Ga0181369_100238214	F048242	N/A	MRKRRIIPTLPVNFFEDVDNKVKYQKMLYSSILDGVEQTLKNGKPGFVMMRVDDGRNIKEVSVLKDSFKTNLETCLEFYEKNEQYELCSKTLNLINQIHE
Ga0181369_10023823	F092854	N/A	MDILKQYIKEYVMYLYNAKIADADEDYQWKHPSDIEHPLQPGYPGDLKGFPYDSSQNKLPPAYTRKRSVAKPHFENKKL
Ga0181369_10023826	F072833	N/A	MKKGDIIKFYLFGIPTVGEVYEINRKDKTVSVISDGYNYPDIQTFKTLPRKKKDIPPWYILKK