Scaffold Ga0181369_1001405

Overview

Basic Information

• Taxon OID: 3300017708
• Scaffold ID: Ga0181369_1001405
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6828
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -20.099
  • Long. (^o): -70.892
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003920	Metagenome / Metatranscriptome	462	Y
F063601	Metagenome	129	Y
F080524	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181369_100140512	F063601	GGA	MKTAILIILFFTLPGVIMGTVSSYRAGQKPHEALYRWLQKFTRRKK
Ga0181369_100140514	F003920	AGG	MLRIIAVVLLMTVSAVAFHDNTFAVFELKEQLQERYINMWELLHQLEYVTQEQRDTVYTEIEHIREEINSIIQQLIEHDRSQHP
Ga0181369_10014053	F080524	N/A	MVGREKTSAAFQIDQFIFRPKNTQLNTGKMKKFNEELLTSDWRKNRPEKYGLTMTDKKTIDKHERLLPPDLIKGKSILDIGSYISQTGDWCLNNGAAKYTGVEVIKDFADKGLELMEKYHAGENWNVINTSIEDYFAKHDEKYDIIFCWGVLFSQMDHAWFIKNLTERADHITINGRHPKVMWNDNQQEISDTLWRKFEYDIPYQEWQVNEMTQTAEKNASVKVTSAHTSMKAVQLLMESNGFVSSTESYDYFKKVMPEDIGMFRERDKVGFFVLECKRDNSAKKPNLFNEMVNQPEVWNEKRIDWS