Basic Information | |
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Taxon OID | 3300017707 Open in IMG/M |
Scaffold ID | Ga0181363_1000126 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MLB.S.N |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 21836 |
Total Scaffold Genes | 45 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (22.22%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Michigan | |||||||
Coordinates | Lat. (o) | 43.2382 | Long. (o) | -86.2805 | Alt. (m) | Depth (m) | 5 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F021113 | Metagenome / Metatranscriptome | 220 | Y |
F023350 | Metagenome / Metatranscriptome | 210 | N |
F027518 | Metagenome / Metatranscriptome | 194 | N |
F071242 | Metagenome / Metatranscriptome | 122 | Y |
F091602 | Metagenome | 107 | N |
Protein ID | Family | RBS | Sequence |
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Ga0181363_100012615 | F027518 | N/A | MNTENEIALIHEELQDMNKKIDRIYHVLIGDDQMKIEGLVDKVQKHDKYIQNQRLQVAKLSGIATTAGVVGGLIVQLILKML |
Ga0181363_100012619 | F021113 | AGGA | MRKNLLFAVLLVLGTTLIWTVICWNWWGRDKSKDVHVKVQKQDSVINYNAGEYDRLLQEQIELYKQLRTYEDAQSKYKTTYQRTRSAVIIRDTIVSVDVLRLVNSCDSVIASDSLVINNLKEQLNIEGEKIDNLQETIGAYEQKEDILTEEINTLTAENKKLDKQKKRRNHALIFTTSVAALSTFVLSILL |
Ga0181363_10001262 | F071242 | GAG | MNMQSKSDAMLACLEFLKLNIKTETEFGKVANGKRQLKLWKHYAWKITRISVNVAFWIFILYKLLF |
Ga0181363_100012630 | F091602 | N/A | MKSELTFCPNCDKELLAERVDFVLQDQQLEDWDSAYEMIDNDGEIVTCPDCDEWDYADDEAKGEGWE |
Ga0181363_100012641 | F023350 | N/A | VKLDRYIEGHYKKFKELAKGIARGEDFYEDLLHDSLLSMFGSKHIEKLIETGEFEFYLIRVMYLSVNSPNSPFYRQTIAWNRNRRDFKEYAHEVDKTWLGARMTNEQLDILISRLTEFERLIFQEYIFEGFTYREFSKQTGIPTVFLYRTIDSIKQKIRANVIRKK |
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