NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181363_1000126

Scaffold Ga0181363_1000126


Overview

Basic Information
Taxon OID3300017707 Open in IMG/M
Scaffold IDGa0181363_1000126 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.ND.MLB.S.N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21836
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (22.22%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.2382Long. (o)-86.2805Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021113Metagenome / Metatranscriptome220Y
F023350Metagenome / Metatranscriptome210N
F027518Metagenome / Metatranscriptome194N
F071242Metagenome / Metatranscriptome122Y
F091602Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0181363_100012615F027518N/AMNTENEIALIHEELQDMNKKIDRIYHVLIGDDQMKIEGLVDKVQKHDKYIQNQRLQVAKLSGIATTAGVVGGLIVQLILKML
Ga0181363_100012619F021113AGGAMRKNLLFAVLLVLGTTLIWTVICWNWWGRDKSKDVHVKVQKQDSVINYNAGEYDRLLQEQIELYKQLRTYEDAQSKYKTTYQRTRSAVIIRDTIVSVDVLRLVNSCDSVIASDSLVINNLKEQLNIEGEKIDNLQETIGAYEQKEDILTEEINTLTAENKKLDKQKKRRNHALIFTTSVAALSTFVLSILL
Ga0181363_10001262F071242GAGMNMQSKSDAMLACLEFLKLNIKTETEFGKVANGKRQLKLWKHYAWKITRISVNVAFWIFILYKLLF
Ga0181363_100012630F091602N/AMKSELTFCPNCDKELLAERVDFVLQDQQLEDWDSAYEMIDNDGEIVTCPDCDEWDYADDEAKGEGWE
Ga0181363_100012641F023350N/AVKLDRYIEGHYKKFKELAKGIARGEDFYEDLLHDSLLSMFGSKHIEKLIETGEFEFYLIRVMYLSVNSPNSPFYRQTIAWNRNRRDFKEYAHEVDKTWLGARMTNEQLDILISRLTEFERLIFQEYIFEGFTYREFSKQTGIPTVFLYRTIDSIKQKIRANVIRKK
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