Scaffold Ga0181377_1019505

Overview

Basic Information

• Taxon OID: 3300017706
• Scaffold ID: Ga0181377_1019505
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1497
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -29.499
  • Long. (^o): -71.609
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013088	Metagenome / Metatranscriptome	274	Y
F077165	Metagenome / Metatranscriptome	117	N
F093807	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181377_10195051	F077165	AGGAG	MDVLGGMSNTENKQQIYLGFKTRDQKFFANGETEVPIEYLQLDTDTFKSGWGRYTKAEGFQYKWDSKFGVVNPKPADEWRRAFSAWVMPSGAEHAYLWQSF
Ga0181377_10195054	F093807	N/A	MNLRKTMTQYKDAVENQRLKLNKEKDEWYIHVNNGAGYTEVKSGNTLTITHHATGKQEIIIDAD
Ga0181377_10195055	F013088	GGAG	MDNSTKKALWIGEELHKDIKIFAIQNNLTIEQATQMLIKLGMVTYESEKDNDTV