Scaffold Ga0181377_1002500

Overview

Basic Information

• Taxon OID: 3300017706
• Scaffold ID: Ga0181377_1002500
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5553
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (6.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -29.499
  • Long. (^o): -71.609
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015933	Metagenome / Metatranscriptome	251	Y
F023483	Metagenome / Metatranscriptome	210	Y
F028800	Metagenome / Metatranscriptome	190	Y
F035084	Metagenome / Metatranscriptome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181377_10025001	F023483	N/A	MGLANGRKSESGNVKLHYSDLEICQIYAEALESETGMPIEKLERVFDYDNYIITYDSAEDKMIIKICGVYVQFEMQDQDVYVVNYGNGSGWQLCYSFAI
Ga0181377_100250015	F015933	N/A	MNKTKENLEAGMYFSFKKHKLYSYTNDVYKVETSKNGYMTLHRHHIHSKTGEYIFTDLVTVRRIGENSLDYYKFDMFGKKTRGRIHYANIDSFFYAMKGKDGKEYTKIEKAIVNEYIDYGSIKKLA
Ga0181377_10025002	F028800	N/A	MNKIEIIDGYDGFEREVTGTYDLDGNNVYEWELCTEDGMTSIYLKDCEVNINLERDDECLEIGIENGDEIYDDILSFVNENGYGFIGEEFE
Ga0181377_10025005	F035084	N/A	MAKVRKGYDAQDRIIARFRRDAKASTNNSAVAKAMRNKKSLKKQKDDGVVFSPLALIQLQNG