Scaffold Ga0181377_1000014

Overview

Basic Information

• Taxon OID: 3300017706
• Scaffold ID: Ga0181377_1000014
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 102237
• Total Scaffold Genes: 94
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (12.77%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -29.499
  • Long. (^o): -71.609
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004866	Metagenome	420	Y
F005243	Metagenome / Metatranscriptome	407	Y
F006666	Metagenome / Metatranscriptome	367	Y
F020206	Metagenome / Metatranscriptome	225	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181377_100001428	F020206	N/A	MALDIKRQNKTYEFSNSSVSKILASKAVGKDILARDHADNAAAIAAGLAKGDVYHTAGALKIVV
Ga0181377_100001439	F006666	N/A	MHPKSHKEFRKNIAEEVEVHPQVVEDFITFYYAKLRRKLSDLSFPRVYVEGLGTFELRKAKLEKAIKKNKSLLGNIAKRTYNGYAKSEDIKTNIEQMENAMKQMHDDILKKENFRNNG
Ga0181377_100001440	F004866	GAG	MAIVKKVDLKLKVNINESIKYQILTYCFFNDILVTNSDLKFLCELSKTPSIELTKFCLTLVNMNIFKSPQSARNAITKAERKGLLSKKGNNKKTITIKPDINIQTEGLVLLDYKILGNASQVTQGV
Ga0181377_100001442	F005243	N/A	MADVKNLDPNKDPQLSKEELTKRREEITQFYKDNIPHLTVQAEYEDLLATIDKARAERLQAQMFMAQTAAQQDNAGEASEDEKAFKEAMEKAAAGAQ