Scaffold Ga0181371_1026760

Overview

Basic Information

• Taxon OID: 3300017704
• Scaffold ID: Ga0181371_1026760
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_07 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 952
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -20.1
  • Long. (^o): -70.419
  • Depth (m): 160

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000126	Metagenome / Metatranscriptome	2021	Y
F027811	Metagenome	193	Y
F101134	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181371_10267602	F101134	N/A	MKEKVTKKLETSMAELIMIILLIVILLSSCGTSYCVQNEWATPLSKQYSRTCNR
Ga0181371_10267603	F000126	GAG	MVQQNTNMRDFKISRKEGEWYNVEVTDSYGNEYQSYFETAYEANEWIYYVWSKEEWFNSVDSQELLYNAIQQCKEIDEKSNRRKIM
Ga0181371_10267604	F027811	N/A	MIYSEKELREMISNLRLWKEMKNCNLTDASEICLTKYELLLENHLNNKYKDLDEWLHKLIEKNGTTEY