NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181371_1017706

Scaffold Ga0181371_1017706


Overview

Basic Information
Taxon OID3300017704 Open in IMG/M
Scaffold IDGa0181371_1017706 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - Lowphox_07 viral metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1191
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-20.1Long. (o)-70.419Alt. (m)Depth (m)160
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003330Metagenome / Metatranscriptome493Y
F040060Metagenome162Y
F094098Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0181371_10177061F003330N/AAGDRFMVGGCLVIAARKKDAWGQPLLRVGDVVRSVPLKDDPGTVTQILQVNANGVHLVAVKWFSWGDGQTTQEYVSELELVSKGS
Ga0181371_10177062F040060GAGMIRIGDLVRGHYFHRKIGVVVKIDDVAEMAFVQYTDSKKSWEPLVNLRRATA
Ga0181371_10177064F094098AGGLKAKQVRGQKNKMFQVGDLIRYEDPVVSNDIPGLVVAVVKDSCGFVSHLEVQWLDWEPGQLATEDEEALELVSSARPK

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