Scaffold Ga0181371_1017706

Overview

Basic Information

• Taxon OID: 3300017704
• Scaffold ID: Ga0181371_1017706
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_07 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1191
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -20.1
  • Long. (^o): -70.419
  • Depth (m): 160

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003330	Metagenome / Metatranscriptome	493	Y
F040060	Metagenome	162	Y
F094098	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181371_10177061	F003330	N/A	AGDRFMVGGCLVIAARKKDAWGQPLLRVGDVVRSVPLKDDPGTVTQILQVNANGVHLVAVKWFSWGDGQTTQEYVSELELVSKGS
Ga0181371_10177062	F040060	GAG	MIRIGDLVRGHYFHRKIGVVVKIDDVAEMAFVQYTDSKKSWEPLVNLRRATA
Ga0181371_10177064	F094098	AGG	LKAKQVRGQKNKMFQVGDLIRYEDPVVSNDIPGLVVAVVKDSCGFVSHLEVQWLDWEPGQLATEDEEALELVSSARPK