Scaffold Ga0181367_1036855

Overview

Basic Information

• Taxon OID: 3300017703
• Scaffold ID: Ga0181367_1036855
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - ?Lowphox_02 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 875
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -20.099
  • Long. (^o): -70.892
  • Depth (m): 160

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041490	Metagenome	160	Y
F081434	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181367_10368551	F081434	GGA	MKTIKFNKDKTVLLDGKNLLTRITHLKGGNWNSCIRDTDSDGKITISPIYPTYHKLGD
Ga0181367_10368553	F041490	N/A	MNREELKRMFLQMDCSNVPVRKEIIVDLRYLDNKHWPNYGYVTIMSDGPDGYRHFATHQEHPLRYALEMMEGDNHNDYSDYELIIKE