Scaffold Ga0181367_1030504

Overview

Basic Information

• Taxon OID: 3300017703
• Scaffold ID: Ga0181367_1030504
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - ?Lowphox_02 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 969
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -20.099
  • Long. (^o): -70.892
  • Depth (m): 160

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001334	Metagenome / Metatranscriptome	720	Y
F003285	Metagenome / Metatranscriptome	496	Y
F061282	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181367_10305041	F061282	N/A	KFEDVLNEDSPTTAMGGGNIATRGIPLLKKPPKGLVMKRFGGIDVFAIDPTYFQKSRLGKKKYTRYSGYVGEDEAGEYIRAFARKFPKKPIIVMDSSTGCMQYLRHGK
Ga0181367_10305042	F001334	N/A	MLKFKEYLQLNADDSIEQVMNGEWIAKSRTTWKATDNEDNKIEIHNDGHDPELQGESWSVHTNTFAPKAFAFFCKQFIEEVRPAELSYARTRIYPPITN
Ga0181367_10305043	F003285	AGCAG	MPEQESIHQLQTEIQTLKIKDEFRTKELDALMKKLTETSTKLNLLSENISRLLVGQDLHKTNDNEVRDELKILHTRIGELHDKMTVMIDKTEAKIDTDINILFRKVESLEKWRWIIIGIATAIAWL