Scaffold Ga0181364

Basic Information
Taxon OID	3300017701 Open in IMG/M
Scaffold ID	Ga0181364_1003074 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.S.N
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300017701 Open in IMG/M

Scaffold ID

Ga0181364_1003074 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.S.N

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2961
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

2961

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	43.1998	Long. (^o)	-86.5698	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan

Coordinates

Lat. (^o)

43.1998

Long. (^o)

-86.5698

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000710	Metagenome / Metatranscriptome	925	Y
F004838	Metagenome / Metatranscriptome	421	Y
F019128	Metagenome / Metatranscriptome	231	Y
F043752	Metagenome / Metatranscriptome	155	N
F051646	Metagenome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181364_10030741	F019128	N/A	LTNTVGKQLGAGFAPYAGLVGSLATSLFLKQPEIAAGMAGYSGAKIGQALLGSDTAIGSLLAENNSFMVSPSMYLQGEMAGEGIYASNYTLAGYEVPGM
Ga0181364_10030742	F004838	N/A	MITAQDKILHVASKLGLSSLQNMQASTGAVYDVDTELSGQIFSQATRHANPSVTNINENQFEVNEALLVETIAFYVKDGSGNTLNFQNNYGSDAVIVFDLVIGNKRVMKDTPVFAAGTPYAFANNGAQAINSGETRTSIYAPRHQVFMEGAGILIPPQVQWYVSYTIFNVVTGAIVTPTDATAIGCYLFGTKVLLNFNTSI
Ga0181364_10030744	F000710	N/A	MASVNMISYRQGIRNKGFQVTVPTTGATQTLSLSGLAKAFEGIIFSSSTSAAPATLVNALQLRVTLTINNDVVIDDVVAHDLGASATSGITSGFPNFIPFPRALTGQDTILLRVTNSSGASQLLNATVYYKNEI
Ga0181364_10030745	F051646	N/A	MVGLFYIYLPMSWQIPTQIEQDIIAGKAKYQTFQTGNGGQSILQVSPNSYVVIFGYDFSPAGGGITVDSDPIVPNVNLETDLIRWFQTQQISFYTGNDFYPFIHHINSDSLPFVNAFNPLTGDTLSTRYTQQINNTPIARQVYITSTNDVAITHGLILNAIPATTGAIPVTSRTPGFLTYGGSAQLIQAQTNYGPVLTPQQFMQPSPKDFQDFGLGLLPGNPTDQAFATPDATNGLLEANVLLLTLGATFPQAAAANYYLCLHYAVYSKTIPEQRP
Ga0181364_10030746	F043752	N/A	MELQKRIDQLREQGFNNFALQDRPGPKPTKANCGRFYPLNKEKRGWANNGD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181364_1003074

Overview

Ecosystem & Geography

Associated Families

Sequences