Scaffold Ga0187694_10949

Overview

Basic Information

• Taxon OID: 3300017581
• Scaffold ID: Ga0187694_10949
• Source Dataset Name: Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with seawater, 20 C, 28 psu salinity and 694 ?mol photons light - Amphidinium carterae CCMP 1314 (MMETSP0398) (SRX549006-SRR1294392)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: National Center for Genome Resources
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 682
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location

• Location Name: Atlantic Ocean
• Coordinates
  • Lat. (^o): 41.56
  • Long. (^o): -70.583

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006064	Metatranscriptome	382	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0187694_109491	F006064	N/A	AAARNMSLFCCDGALCAHSAKFRAATGPAPIVPDGSQVRGSQALPMLQDWDKLGAKEKEVVQEKLEGIVNAFARELIRGKVFMKLGRNGRLFYRLCTLDKQLTAFSMHIKGAIVEYPFANMQHISFGYDLTDFTHVPVSLPSDALAAVIVMDNRRMNLVFSSPMERDEFVTCMLVLKERHKRTEKA