Scaffold Ga0180217_1000252

Overview

Basic Information

• Taxon OID: 3300017540
• Scaffold ID: Ga0180217_1000252
• Source Dataset Name: Enriched Organic Plus compost microbial communities from Emeryville, California, USA - eDNA 3rd pass 37_C BE-Lig OP (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 100449
• Total Scaffold Genes: 105
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 68 (64.76%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Compost → Lignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa

Source Dataset Sampling Location

• Location Name: USA: Emeryville, California
• Coordinates
  • Lat. (^o): 37.83
  • Long. (^o): -122.29

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050234	Metagenome / Metatranscriptome	145	Y
F067546	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0180217_100025242	F067546	AGG	MASVAPQRAPLSVRTEGPAIVLTLCEQLDDLTGPVLVDAVASAVATAPQRVEIDLTELLGWTDAGAQSLVRCRELCRDLPDGLHYRTGRGPGRDALLAAYR
Ga0180217_100025257	F050234	GGAGG	VVPPWWLLIPMLEFPVLMALLDCWQRPPEHFAEGAEDRRAWLRWLLVAVLTVPVLLGYGIILGYFYAVVRRNSPASPR