Scaffold Ga0186460_1018705

Overview

Basic Information

• Taxon OID: 3300017515
• Scaffold ID: Ga0186460_1018705
• Source Dataset Name: Metatranscriptome of marine eukaryotic communities from English Channel in f/20 medium with seawater, no silicate, 18 C, 30 psu salinity and 321 ?mol photons light - Alexandrium tamarense CCMP 1771 (MMETSP0384)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: National Center for Genome Resources
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1380
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location

• Location Name: English Channel
• Coordinates
  • Lat. (^o): 50.6
  • Long. (^o): 4.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001544	Metagenome / Metatranscriptome	673	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0186460_10187051	F001544	GGA	MVAKTKRVSKIVNAKGSSGSATKTKTISKIVKSQGVSKNQPALKKIRVGILVGKDFDPVKKGTQWPDFPKRFILTQEEWGKYSVDVATALKMQQLHPDLLDIDIIPGKEVTQKRLQKNHVNLNFWYDVGVSMLHGDKKHVDEVMRCHKNPDCRLDPSWDYYDWVLCKPRYMEQCKKAGIPTIPTVVYKNGFDPRQCLKDVQKMQWDKFFVKVGHFSFFGAGAIHGKTEDFLGKRSKDMDDYAKANKKSKVFLLQPYTLKPNGEVFDEVRNFFIDGQWRYSVFTHGTDETDAGYYEEPDGPRKVACKELAEKVYQEVLKAATWQGKRQTPLLNRIDIGVVPKKGGDSLNKTDNTYFLNEVELIMTTWLDRYSPISVQDAMAQASVKHTLELLAGLLNAKKKVPDEANVRKAINILNSRLGPFQHIKVKA