Scaffold Ga0186257_1023334

Overview

Basic Information

• Taxon OID: 3300017487
• Scaffold ID: Ga0186257_1023334
• Source Dataset Name: Metatranscriptome of marine eukaryotic communities from Penn Cove, Washington, USA in F/2 medium with seawater, 15 C, 30 psu salinity and 102 ?mol photons light - Mesodinium pulex SPMC105 (MMETSP0467)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: National Center for Genome Resources
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 913
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Pseudo-nitzschia → Pseudo-nitzschia australis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 48.5
  • Long. (^o): -122.6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011850	Metagenome / Metatranscriptome	286	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0186257_10233341	F011850	N/A	RTVLVLACSLLLFAPSSHAFAPAGVARVGMPLRGKSVSARSARVTPAKMAMDPSQLSHIADGAQTFLSTLDTVPFIDEVTGEPQGFTSPKNHFASVIGLWVLFALPVWSAAYKQAGCTTPDWFGVSQVAEDAPGVGLLAKAAPEYNGPSFREGLEYVFSFVWKPPILIAWKPRADLDRDAMDPARDTVVSSLYKGLGGALDKTAVYDEEDQLLILSDIVTFEETDLGRRREAIAEASGWYTGNPSFGRSLIEYSEQTRKGKRDQGTVTISTEELAKLRAEAAKK