Scaffold Ga0186654_1023775

Overview

Basic Information

• Taxon OID: 3300017481
• Scaffold ID: Ga0186654_1023775
• Source Dataset Name: Metatranscriptome of coastal eukaryotic communities from South Pacific Ocean in L1 medium, 22 C, 20 psu salinity and 674 ?mol photons light - Karlodinium veneficum CCMP 2283 (MMETSP1017)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: National Center for Genome Resources
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1090
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location

• Location Name: South Pacific Ocean
• Coordinates
  • Lat. (^o): -32.2167
  • Long. (^o): -80.7355

Associated Families

Family	Category	Number of Sequences	3D Structure?
F081975	Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0186654_10237751	F081975	GGTGG	MFTVTPARNALTLGATNSSASMASLYGQVFSKGFARGWTGGLFPATAACPTFICLGPAYHMFAGFAGVPAAVVIASCMESCIMFGAETANAQLAKNEKAPGTFKTTQPLWKPWGPGISIHILRNVLATAGLRMFCKPCTSAIEAVTGTSNGMTQAAGDFSGNVVSACMTAPIHQLYGFVATTPELRTASRKETSERMTKFLKDQYLVTEGGKTRLSSTVPRDLSMRSFYVATLYTMYVTLERALVNNWPR