Scaffold Ga0186405_1025505

Overview

Basic Information

• Taxon OID: 3300017478
• Scaffold ID: Ga0186405_1025505
• Source Dataset Name: Metatranscriptome of marine eukaryotic communities from La Jolla, California in f/2 medium with natural seawater and antibiotics, no silicate, 22 C, 21 psu salinity and 620 ?mol photons light - Kryptoperidinium foliaceum CCMP 1326 (MMETSP0121_2)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: National Center for Genome Resources
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 916
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Spumella → Spumella elongata (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location

• Location Name: USA: Scripps Institute of Oceanography, pier, La Jolla, California
• Coordinates
  • Lat. (^o): 32.9
  • Long. (^o): -117.255

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016530	Metatranscriptome	246	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0186405_10255051	F016530	AGGA	MLGLGTSDAVSEKQLSVKNGQVLLLAAGDWFSSRASAEAEQRQAYREQWQYEAESRLARIEAKKSPLEKAGEGLTTQKFAWSKDGQKAFEWRKIYHALCQFVGQMPDGGLITECVISPTAMRMYTDHRVMGAVVLPGVSHVSLMAATGSLGFPNPGGIAGDWHMSIKETLFERPYIVNSGAELIAAIQAGADPSQLGGGGGGMQAAMLPVGVPMTYCRATSVSKERGQIKPTMDWAK