Scaffold Ga0186621_1022324

Overview

Basic Information

• Taxon OID: 3300017374
• Scaffold ID: Ga0186621_1022324
• Source Dataset Name: Metatranscriptome of marine algae-associated eukaryotic communities from Gulf of Mexico in L1 medium with seawater, 25 C, 35 psu salinity and 575 ?mol photons light - Karenia brevis SP1 (MMETSP0573)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: National Center for Genome Resources
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1342
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location

• Location Name: Gulf of Mexico
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F085096	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0186621_10223241	F085096	N/A	RRSTVYCSCKCWVDLAGAIMRLALLPVVSMATHMPEWFLEKLKNADHSDTYDTCNSPTCEAPPHKYENILPIQPGIQWMQHGGYCGAWSVQRAAMAKGAYISQQQVRDHAKYGGGHDEEILNTNIDGALKKLKIKGEGFEYNVLPEPQSDEYLKFMKKHLVVGNAVIWMVMFSGDSYPDAGYEYDNTTNGIYGHVEPVVGIMSNHPLSDETVHEDDAFAYFDDASKTTYYVTPKRVAGECAFGGRSHCRARCPTGLFGQCVWKERGYIWGIQGFLDERDAVPLTLSISPWASEPYTRGGAKPIEITGTLTATSLRTGSKYDIYRWNSAEEAFVYNDTNKIASFTASSDTHVFEDPSKFLSSSATYYRCVLAGDAAVLV